Interface Documentation

Many fields in the UI have tool-tips when hovered. If the tool-tips do not help find the explanation for every button, field and panel below.

Menu bar

• File

  • Load Image

    To load a gray scale image (png, tiff) navigate to the directory where the image is stored and load it.

  • Save

    This will save the current scene (detected positions, mesh, etc.) as a json in the standard location (directory of image in a subdirectory with the image's name) under the standard name (all)

  • Save as

    Same as Save but gives the option to choose the directory and file name

  • Quit

    Closes Cellogram

• View

  • Image

    Toggle displaying the image

  • Points

    Toggle displaying the detected markers

  • Points Color (color picker)

    Pick color of displayed markers

  • Mesh

    Toggle displaying retrieved mesh

  • Mesh Color (color picker)

    Pick color of retrieved mesh

  • Mesh Fill

    Toggle the fill of the mesh faces

  • Displacements

    Toggle the visualization of displacements

  • Traction

    Toggle to show tractions

  • Point size (slider)

    Change the displayed size of detected markers

Input File

• Load Image

  Load a gray scale image (png, tiff). Navigate to the directory where the image is stored and load it.

• Load data (icon)

  If data is available as a json in the standard location (directory of image in a subdirectory with the image's name) under the standard name (all), this button is enabled. It will load previously stored data and jump to the last available stage in the analysis process.

• Save data (icon)

  Saves current scene as a json in the standard location (directory of image in a subdirectory with the image's name) under the standard name (all)